Package Bio :: Package SeqIO :: Module SffIO :: Class SffWriter

Class SffWriter

Interfaces.SequenceWriter --+
                            |
                           SffWriter

SFF file writer.

Instance Methods

[hide private]

__init__(self, handle, index=True, xml=None)
Creates the writer object.

source code

write_file(self, records)
Use this to write an entire file containing the given records.

source code

_write_index(self)

source code

write_header(self)

source code

write_record(self, record)
Write a single additional record to the output file.

source code

Inherited from Interfaces.SequenceWriter: clean

Inherited from Interfaces.SequenceWriter (private): _get_seq_string

Method Details

[hide private]

init(self, handle, index=True, xml=None)
(Constructor)

source code

Creates the writer object.

handle - Output handle, ideally in binary write mode. index - Boolean argument, should we try and write an index? xml - Optional string argument, xml to be recorded in the index block.

Overrides: Interfaces.SequenceWriter.__init__

write_file(self, records)

source code

Use this to write an entire file containing the given records.

Overrides: Interfaces.SequenceWriter.write_file

write_record(self, record)

source code

Write a single additional record to the output file.

This assumes the header has been done.

Class SffWriter

__init__(self, handle, index=True, xml=None) (Constructor)

write_file(self, records)

write_record(self, record)

init(self, handle, index=True, xml=None)
(Constructor)