.. automodule:: obicut
   
   
   :py:mod:`obicut` specific options
   ---------------------------------   

   .. cmdoption:: -b <INTEGER>, --begin=<INTEGER>

         Integer value (possibly calculated using a python expression) 
         indicating the first position of the sequence to be kept.

   .. cmdoption::  -e <INTEGER>, --end=<INTEGER>

         Integer value (possibly calculated using a python expression) 
         indicating the last position of the sequence to be kept.
   
   .. include:: ../optionsSet/sequenceFilter.txt
   
   .. include:: ../optionsSet/taxonomyFilter.txt
   
   .. include:: ../optionsSet/defaultoptions.txt