Package htsjdk.tribble

Class Tribble

  • public class Tribble
extends Object
    Common, tribble wide constants and static functions

    • Method Detail

      • indexFile

        public static String indexFile​(String filename)
        Return the name of the index file for the provided filename Does not actually create an index
        Parameters:
        filename - name of the file
        Returns:
        non-null String representing the index filename

      • indexFile

        public static File indexFile​(File file)
        Return the File of the index file for the provided file Does not actually create an index
        Parameters:
        file - the file
        Returns:
        a non-null File representing the index

      • indexPath

        public static Path indexPath​(Path path)
        Return the name of the index file for the provided path Does not actually create an index
        Parameters:
        path - the path
        Returns:
        Path representing the index filename

      • tabixIndexFile

        public static String tabixIndexFile​(String filename)
        Return the name of the tabix index file for the provided filename Does not actually create an index
        Parameters:
        filename - name of the file
        Returns:
        non-null String representing the index filename

      • tabixIndexFile

        public static File tabixIndexFile​(File file)
        Return the File of the tabix index file for the provided file Does not actually create an index
        Parameters:
        file - the file
        Returns:
        a non-null File representing the index

      • tabixIndexPath

        public static Path tabixIndexPath​(Path path)
        Return the name of the tabix index file for the provided path Does not actually create an index
        Parameters:
        path - the path
        Returns:
        Path representing the index filename