ExternalCodec (htsjdk 2.18.2 API)

java.lang.Object
- htsjdk.samtools.cram.encoding.external.ExternalCodec<T>

Type Parameters:

T - data series type to be read or written

All Implemented Interfaces:

CRAMCodec<T>

Direct Known Subclasses:

ByteArrayStopCodec, ExternalByteArrayCodec, ExternalByteCodec
```
public abstract class ExternalCodec<T>
extends Object
implements CRAMCodec<T>
```
Superclass of Codecs which operate on External Block byte streams Contrast with CoreCodec for Core Block bit streams

- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  protected ByteArrayInputStream inputStream
  
  protected ByteArrayOutputStream outputStream
- Method Summary
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
  - Methods inherited from interface htsjdk.samtools.cram.encoding.CRAMCodec
    read, read, write

Field Detail

inputStream

protected final ByteArrayInputStream inputStream

outputStream

protected final ByteArrayOutputStream outputStream