java.lang.Object
- htsjdk.samtools.cram.encoding.CRAMEncoding<byte[]>
- - htsjdk.samtools.cram.encoding.ByteArrayLenEncoding

public class ByteArrayLenEncoding
extends CRAMEncoding<byte[]>

Constructor Summary

Constructors
Constructor Description

ByteArrayLenEncoding(CRAMEncoding<Integer> lenEncoding, CRAMEncoding<byte[]> byteEncoding)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`CRAMCodec<byte[]>`	`buildCodec(BitInputStream coreBlockInputStream, BitOutputStream coreBlockOutputStream, Map<Integer,ByteArrayInputStream> externalBlockInputMap, Map<Integer,ByteArrayOutputStream> externalBlockOutputMap)`	Instantiate the codec represented by this encoding by supplying it with the appropriate streams
`static ByteArrayLenEncoding`	`fromParams(byte[] data)`
`byte[]`	`toByteArray()`	Subclasses but have a defined serialization of their parameters

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding
buildReadCodec, buildWriteCodec, id, toParam

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ByteArrayLenEncoding
```
public ByteArrayLenEncoding(CRAMEncoding<Integer> lenEncoding,
                            CRAMEncoding<byte[]> byteEncoding)
```
- Method Detail
  - fromParams
```
public static ByteArrayLenEncoding fromParams(byte[] data)
```
  - toByteArray
```
public byte[] toByteArray()
```
    Description copied from class: CRAMEncoding
    
    Subclasses but have a defined serialization of their parameters
    
    Specified by:
    
    toByteArray in class CRAMEncoding<byte[]>
    
    Returns:
    
    a byte array representing a specific encoding's parameter values
  - buildCodec
```
public CRAMCodec<byte[]> buildCodec(BitInputStream coreBlockInputStream,
                                    BitOutputStream coreBlockOutputStream,
                                    Map<Integer,ByteArrayInputStream> externalBlockInputMap,
                                    Map<Integer,ByteArrayOutputStream> externalBlockOutputMap)
```
    Description copied from class: CRAMEncoding
    
    Instantiate the codec represented by this encoding by supplying it with the appropriate streams
    
    Specified by:
    
    buildCodec in class CRAMEncoding<byte[]>
    
    Parameters:
    
    coreBlockInputStream - the core block bit stream a CoreCodec will read from
    
    coreBlockOutputStream - the core block bit stream a CoreCodec will write to
    
    externalBlockInputMap - the external block byte stream a ExternalCodec will read from
    
    externalBlockOutputMap - the external block byte stream a ExternalCodec will write to
    
    Returns:
    
    a newly instantiated codec

Class ByteArrayLenEncoding

Constructor Summary

Method Summary

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding

Methods inherited from class java.lang.Object

Constructor Detail

ByteArrayLenEncoding

Method Detail

fromParams

toByteArray

buildCodec