Package htsjdk.samtools

Enum SAMTag

    • Method Detail

      • values

        public static SAMTag[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows: 
        for (SAMTag c : SAMTag.values())
    System.out.println(c);
        Returns:
        an array containing the constants of this enum type, in the order they are declared

      • valueOf

        public static SAMTag valueOf​(String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum type has no constant with the specified name
        NullPointerException - if the argument is null

      • makeBinaryTag

        public static short makeBinaryTag​(String tag)
        Convert from String representation of tag name to short representation.
        Parameters:
        tag - 2-character String representation of a tag name.
        Returns:
        Tag name packed as 2 ASCII bytes in a short.

      • makeStringTag

        public static String makeStringTag​(short tag)
        Convert from short representation of tag name to String representation.
        Parameters:
        tag - Tag name packed as 2 ASCII bytes in a short.
        Returns:
        2-character String representation of a tag name.

      • getBinaryTag

        public short getBinaryTag()
        Get the binary representation of this tag name.
        Returns:
        the binary representation of this tag name
        See Also:
        makeBinaryTag(String)