SpTuples.cpp

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/****************************************************************/
/* Parallel Combinatorial BLAS Library (for Graph Computations) */
/* version 1.6 -------------------------------------------------*/
/* date: 6/15/2017 ---------------------------------------------*/
/* authors: Ariful Azad, Aydin Buluc  --------------------------*/
/****************************************************************/
/*
 Copyright (c) 2010-2017, The Regents of the University of California
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 THE SOFTWARE.
 */
 
 
#include "SpTuples.h"
#include "SpParHelper.h"
#include <iomanip>
 
namespace combblas {
 
template <class IT,class NT>
SpTuples<IT,NT>::SpTuples(int64_t size, IT nRow, IT nCol)
:m(nRow), n(nCol), nnz(size)
{
    if(nnz > 0)
    {
        tuples  = new std::tuple<IT, IT, NT>[nnz];
    }
    else
    {
        tuples = NULL;
    }
    isOperatorNew = false;
}
 
template <class IT,class NT>
SpTuples<IT,NT>::SpTuples (int64_t size, IT nRow, IT nCol, std::tuple<IT, IT, NT> * mytuples, bool sorted, bool isOpNew)
:tuples(mytuples), m(nRow), n(nCol), nnz(size), isOperatorNew(isOpNew)
{
    if(!sorted)
    {
        SortColBased();
    }
    
}
 
template <class IT, class NT>
SpTuples<IT,NT>::SpTuples (int64_t maxnnz, IT nRow, IT nCol, std::vector<IT> & edges, bool removeloops):m(nRow), n(nCol)
{
    if(maxnnz > 0)
    {
        tuples  = new std::tuple<IT, IT, NT>[maxnnz];
    }
    for(int64_t i=0; i<maxnnz; ++i)
    {
        rowindex(i) = edges[2*i+0];
        colindex(i) = edges[2*i+1];
        numvalue(i) = (NT) 1;
    }
    std::vector<IT>().swap(edges);  // free memory for edges
 
    nnz = maxnnz;   // for now (to sort)
    SortColBased();
 
    int64_t cnz = 0;
    int64_t dup = 0;  int64_t self = 0;
    nnz = 0; 
    while(cnz < maxnnz)
    {
        int64_t j=cnz+1;
        while(j < maxnnz && rowindex(cnz) == rowindex(j) && colindex(cnz) == colindex(j)) 
        {
            numvalue(cnz) +=  numvalue(j);  
            numvalue(j++) = 0;  // mark for deletion
            ++dup;
        }
        if(removeloops && rowindex(cnz) == colindex(cnz))
        {
            numvalue(cnz) = 0;
            --nnz;
            ++self;
        }
        ++nnz;
        cnz = j;
    }
 
    std::tuple<IT, IT, NT> * ntuples = new std::tuple<IT,IT,NT>[nnz];
    int64_t j = 0;
    for(int64_t i=0; i<maxnnz; ++i)
    {
        if(numvalue(i) != 0)
        {
            ntuples[j++] = tuples[i];
        }
    }
    assert(j == nnz);
 
    delete [] tuples;
    tuples = ntuples;
    isOperatorNew = false;
}
 
 
template <class IT, class NT>
SpTuples<IT,NT>::SpTuples (int64_t size, IT nRow, IT nCol, StackEntry<NT, std::pair<IT,IT> > * & multstack)
:m(nRow), n(nCol), nnz(size)
{
    isOperatorNew = false;
    if(nnz > 0)
    {
        tuples  = new std::tuple<IT, IT, NT>[nnz];
    }
    for(int64_t i=0; i<nnz; ++i)
    {
        colindex(i) = multstack[i].key.first;
        rowindex(i) = multstack[i].key.second;
        numvalue(i) = multstack[i].value;
    }
    delete [] multstack;
}
 
 
template <class IT,class NT>
SpTuples<IT,NT>::~SpTuples()
{
    if(nnz > 0)
    {
        if(isOperatorNew)
            ::operator delete(tuples);
        else
            delete [] tuples;
    }
}
 
template <class IT,class NT>
SpTuples<IT,NT>::SpTuples(const SpTuples<IT,NT> & rhs): m(rhs.m), n(rhs.n), nnz(rhs.nnz)
{
    tuples  = new std::tuple<IT, IT, NT>[nnz];
    isOperatorNew = false;
    for(IT i=0; i< nnz; ++i)
    {
        tuples[i] = rhs.tuples[i];
    }
}
 
template <class IT,class NT>
SpTuples<IT,NT>::SpTuples (const SpDCCols<IT,NT> & rhs):  m(rhs.m), n(rhs.n), nnz(rhs.nnz)
{
    if(nnz > 0)
    {
        FillTuples(rhs.dcsc);
    }
    isOperatorNew = false;
}
 
template <class IT,class NT>
inline void SpTuples<IT,NT>::FillTuples (Dcsc<IT,NT> * mydcsc)
{
    tuples  = new std::tuple<IT, IT, NT>[nnz];
    IT k = 0;
    for(IT i = 0; i< mydcsc->nzc; ++i)
    {
        for(IT j = mydcsc->cp[i]; j< mydcsc->cp[i+1]; ++j)
        {
            colindex(k) = mydcsc->jc[i];
            rowindex(k) = mydcsc->ir[j];
            numvalue(k++) = mydcsc->numx[j];
        }
    }
}
    
 
// Hint1: The assignment operator (operates on an existing object)
// Hint2: The assignment operator is the only operator that is not inherited.
//        Make sure that base class data are also updated during assignment
template <class IT,class NT>
SpTuples<IT,NT> & SpTuples<IT,NT>::operator=(const SpTuples<IT,NT> & rhs)
{
    if(this != &rhs)    // "this" pointer stores the address of the class instance
    {
        if(nnz > 0)
        {
            // make empty
            if(isOperatorNew)
                ::operator delete(tuples);
            else
                delete [] tuples;
        }
        m = rhs.m;
        n = rhs.n;
        nnz = rhs.nnz;
        isOperatorNew = false;
 
        if(nnz> 0)
        {
            tuples  = new std::tuple<IT, IT, NT>[nnz];
            for(IT i=0; i< nnz; ++i)
            {
                tuples[i] = rhs.tuples[i];
            }
        }
    }
    return *this;
}
 
template <class IT,class NT>
template <typename BINFUNC>
void SpTuples<IT,NT>::RemoveDuplicates(BINFUNC BinOp)
{
    if(nnz > 0)
    {
        std::vector< std::tuple<IT, IT, NT> > summed;
        summed.push_back(tuples[0]);
    
        for(IT i=1; i< nnz; ++i)
            {
                if((joker::get<0>(summed.back()) == joker::get<0>(tuples[i])) && (joker::get<1>(summed.back()) == joker::get<1>(tuples[i])))
            {
                joker::get<2>(summed.back()) = BinOp(joker::get<2>(summed.back()), joker::get<2>(tuples[i]));
            }
            else
            {
                summed.push_back(tuples[i]);
                
            }
                }
        if(isOperatorNew)
            ::operator delete(tuples);
        else
            delete [] tuples;
        tuples  = new std::tuple<IT, IT, NT>[summed.size()];
        isOperatorNew = false;
    std::copy(summed.begin(), summed.end(), tuples);
        nnz =  summed.size();
    }
}
 
 
template <class IT,class NT>
std::ifstream& SpTuples<IT,NT>::getstream (std::ifstream& infile)
{
    std::cout << "Getting... SpTuples" << std::endl;
    IT cnz = 0;
    if (infile.is_open())
    {
        while ( (!infile.eof()) && cnz < nnz)
        {
            infile >> rowindex(cnz) >> colindex(cnz) >>  numvalue(cnz); // row-col-value
            
            rowindex(cnz) --;
            colindex(cnz) --;
            
            if((rowindex(cnz) > m) || (colindex(cnz)  > n))
            {
                std::cerr << "supplied matrix indices are beyond specified boundaries, aborting..." << std::endl;
            }
            ++cnz;
        }
        assert(nnz == cnz);
    }
    else
    {
        std::cerr << "input file is not open!" << std::endl;
    }
    return infile;
}
 
template <class IT,class NT>
std::ofstream& SpTuples<IT,NT>::putstream(std::ofstream& outfile) const
{
    outfile << m <<"\t"<< n <<"\t"<< nnz<<std::endl;
    for (IT i = 0; i < nnz; ++i)
    {
        outfile << rowindex(i)+1  <<"\t"<< colindex(i)+1 <<"\t"
            << numvalue(i) << std::endl;
    }
    return outfile;
}
 
template <class IT,class NT>
void SpTuples<IT,NT>::PrintInfo()
{
    std::cout << "This is a SpTuples class" << std::endl;
 
    std::cout << "m: " << m ;
    std::cout << ", n: " << n ;
    std::cout << ", nnz: "<< nnz << std::endl;
 
    for(IT i=0; i< nnz; ++i)
    {
        if(rowindex(i) < 0 || colindex(i) < 0)
        {
            std::cout << "Negative index at " << i << std::endl;
            return;
        }
        else if(rowindex(i) >= m || colindex(i) >= n)
        {
            std::cout << "Index " << i << " too big with values (" << rowindex(i) << ","<< colindex(i) << ")" << std::endl;
        }
    }
 
    if(m < 8 && n < 8)  // small enough to print
    {
        NT ** A = SpHelper::allocate2D<NT>(m,n);
        for(IT i=0; i< m; ++i)
            for(IT j=0; j<n; ++j)
                A[i][j] = 0.0;
        
        for(IT i=0; i< nnz; ++i)
        {
            A[rowindex(i)][colindex(i)] = numvalue(i);          
        } 
        for(IT i=0; i< m; ++i)
        {
                        for(IT j=0; j<n; ++j)
            {
                                std::cout << std::setiosflags(std::ios::fixed) << std::setprecision(2) << A[i][j];
                std::cout << " ";
            }
            std::cout << std::endl;
        }
        SpHelper::deallocate2D(A,m);
    }
}
 
}