MCL.cpp File Reference

#include <mpi.h>
#include <stdint.h>
#include <sys/time.h>
#include <iostream>
#include <fstream>
#include <string>
#include <sstream>
#include <ctime>
#include <cmath>
#include "CombBLAS/CombBLAS.h"
#include "CC.h"
#include "WriteMCLClusters.h"

Include dependency graph for MCL.cpp:

Go to the source code of this file.

Classes
class	Dist< NT >
struct	HipMCLParam

Macros
#define	__STDC_CONSTANT_MACROS
#define	__STDC_LIMIT_MACROS
#define	EPS   0.0001

Functions
void	InitParam (HipMCLParam &param)
void	ShowParam (HipMCLParam &param)
void	ProcessParam (int argc, char *argv[], HipMCLParam &param)
void	ShowOptions ()
template<typename IT , typename NT , typename DER >
FullyDistVec< IT, IT >	Interpret (SpParMat< IT, NT, DER > &A)
template<typename IT , typename NT , typename DER >
void	MakeColStochastic (SpParMat< IT, NT, DER > &A)
template<typename IT , typename NT , typename DER >
NT	Chaos (SpParMat< IT, NT, DER > &A)
template<typename IT , typename NT , typename DER >
void	Inflate (SpParMat< IT, NT, DER > &A, double power)
template<typename IT , typename NT , typename DER >
void	AdjustLoops (SpParMat< IT, NT, DER > &A)
template<typename IT , typename NT , typename DER >
void	RemoveIsolated (SpParMat< IT, NT, DER > &A, HipMCLParam &param)
template<typename IT , typename NT , typename DER >
void	RandPermute (SpParMat< IT, NT, DER > &A, HipMCLParam &param)
template<typename IT , typename NT , typename DER >
FullyDistVec< IT, IT >	HipMCL (SpParMat< IT, NT, DER > &A, HipMCLParam &param)
template<typename IT , typename NT , typename DER >
void	Symmetricize (SpParMat< IT, NT, DER > &A)
template<typename GIT , typename LIT , typename NT >
void	MainBody (HipMCLParam &param)
int	main (int argc, char *argv[])

Variables
double	mcl_Abcasttime
double	mcl_Bbcasttime
double	mcl_localspgemmtime
double	mcl_multiwaymergetime
double	mcl_kselecttime
double	mcl_prunecolumntime
double	cblas_allgathertime
int64_t	mcl_memory
double	tIO

Macro Definition Documentation

__STDC_CONSTANT_MACROS

#define __STDC_CONSTANT_MACROS

Definition at line 34 of file MCL.cpp.

__STDC_LIMIT_MACROS

#define __STDC_LIMIT_MACROS

Definition at line 37 of file MCL.cpp.

EPS

#define EPS   0.0001

Definition at line 55 of file MCL.cpp.

Function Documentation

AdjustLoops()

template<typename IT , typename NT , typename DER >

void AdjustLoops

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 386 of file MCL.cpp.

Chaos()

template<typename IT , typename NT , typename DER >

NT Chaos

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 361 of file MCL.cpp.

HipMCL()

template<typename IT , typename NT , typename DER >

FullyDistVec< IT, IT > HipMCL	(	SpParMat< IT, NT, DER > &	A,
		HipMCLParam &	param
	)

Definition at line 437 of file MCL.cpp.

Inflate()

template<typename IT , typename NT , typename DER >

void Inflate	(	SpParMat< IT, NT, DER > &	A,
		double	power
	)

Definition at line 377 of file MCL.cpp.

InitParam()

void InitParam

(

HipMCLParam &

param

)

Definition at line 115 of file MCL.cpp.

Interpret()

template<typename IT , typename NT , typename DER >

FullyDistVec< IT, IT > Interpret

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 338 of file MCL.cpp.

main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 635 of file MCL.cpp.

MainBody()

template<typename GIT , typename LIT , typename NT >

void MainBody

(

HipMCLParam &

param

)

Definition at line 556 of file MCL.cpp.

MakeColStochastic()

template<typename IT , typename NT , typename DER >

void MakeColStochastic

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 353 of file MCL.cpp.

ProcessParam()

void ProcessParam	(	int	argc,
		char *	argv[],
		HipMCLParam &	param
	)

Definition at line 209 of file MCL.cpp.

RandPermute()

template<typename IT , typename NT , typename DER >

void RandPermute	(	SpParMat< IT, NT, DER > &	A,
		HipMCLParam &	param
	)

Definition at line 419 of file MCL.cpp.

RemoveIsolated()

template<typename IT , typename NT , typename DER >

void RemoveIsolated	(	SpParMat< IT, NT, DER > &	A,
		HipMCLParam &	param
	)

Definition at line 399 of file MCL.cpp.

ShowOptions()

void ShowOptions

(

)

Definition at line 279 of file MCL.cpp.

ShowParam()

void ShowParam

(

HipMCLParam &

param

)

Definition at line 149 of file MCL.cpp.

Symmetricize()

template<typename IT , typename NT , typename DER >

void Symmetricize

(

SpParMat< IT, NT, DER > &

A

)

Definition at line 544 of file MCL.cpp.

Variable Documentation

cblas_allgathertime

double cblas_allgathertime

Definition at line 63 of file MCL.cpp.

mcl_Abcasttime

double mcl_Abcasttime

Definition at line 57 of file MCL.cpp.

mcl_Bbcasttime

double mcl_Bbcasttime

Definition at line 58 of file MCL.cpp.

mcl_kselecttime

double mcl_kselecttime

Definition at line 61 of file MCL.cpp.

mcl_localspgemmtime

double mcl_localspgemmtime

Definition at line 59 of file MCL.cpp.

mcl_memory

int64_t mcl_memory

Definition at line 64 of file MCL.cpp.

mcl_multiwaymergetime

double mcl_multiwaymergetime

Definition at line 60 of file MCL.cpp.

mcl_prunecolumntime

double mcl_prunecolumntime

Definition at line 62 of file MCL.cpp.

tIO

double tIO

Definition at line 65 of file MCL.cpp.