
NAME
****
**csg_stat** - Part of the VOTCA package

SYNOPSIS
********
**csg_stat** [OPTIONS]

**csg_stat** [--help]



DESCRIPTION
***********

Calculate all distributions (bonded and non-bonded) specified in options file.
Optionally calculates update Eigen::Matrix3d for invere Monte Carlo. This program
is called inside the inverse scripts. Unlike csg_boltzmann, big systems
can be treated as well as non-bonded interactions can be evaluated.







OPTIONS
*******
.. highlight:: none

::

  Allowed options:
  
    -h [ --help ]             display this help and exit
    --verbose                 be loud and noisy
    --verbose1                be very loud and noisy
    -v [ --verbose2 ]         be extremly loud and noisy
    --top arg                 atomistic topology file
  
  Mapping options:
  
    --cg arg                  [OPTIONAL] coarse graining mapping and bond 
                            definitions
                              (xml-file). If no file is given, program acts on 
                            original trajectory
    --map-ignore arg          list of molecules to ignore if mapping is done 
                            separated by ;
  
  Specific options:
  
    --options arg             options file for coarse graining
    --do-imc                  write out additional Inverse Monte Carlo data
    --include-intra           do not exclude intramolecular neighbors
    --block-length arg        write blocks of this length, the averages are 
                            cleared after every write
    --ext arg (=dist.new)   Extension of the output
  
  Threading options:
  
    --nt arg (=1)             number of threads
  
  Trajectory options:
  
    --trj arg                 atomistic trajectory file
    --begin arg (=0)          skip frames before this time (only works for 
                            Gromacs files)
    --first-frame arg (=0)    start with this frame
    --nframes arg             process the given number of frames
