
NAME
****
**csg_density** - Part of the VOTCA package

SYNOPSIS
********
**csg_density** [OPTIONS]

**csg_density** [--help]



DESCRIPTION
***********

Calculates the mass density distribution along a box axis or radial density profile from reference point







OPTIONS
*******
.. highlight:: none

::

  Allowed options:
  
    -h [ --help ]             display this help and exit
    --verbose                 be loud and noisy
    --verbose1                be very loud and noisy
    -v [ --verbose2 ]         be extremly loud and noisy
    --top arg                 atomistic topology file
  
  Mapping options:
  
    --cg arg                  [OPTIONAL] coarse graining mapping and bond 
                            definitions
                              (xml-file). If no file is given, program acts on 
                            original trajectory
    --map-ignore arg          list of molecules to ignore if mapping is done 
                            separated by ;
  
  Specific options::
  
    --type arg (=mass)      density type: mass or number
    --axis arg (=r)         [x|y|z|r] density axis (r=spherical)
    --step arg (=0.01)      spacing of density
    --block-length arg        write blocks of this length, the averages are 
                            cleared after every write
    --out arg               Output file
    --rmax arg              rmax (default for [r] =min of all box vectors/2, else
                            l )
    --scale arg (=1)        scale factor for the density
    --molname arg (=*)      molname
    --filter arg (=*)       filter bead names
    --ref arg               reference zero point
  
  Trajectory options:
  
    --trj arg                 atomistic trajectory file
    --begin arg (=0)          skip frames before this time (only works for 
                            Gromacs files)
    --first-frame arg (=0)    start with this frame
    --nframes arg             process the given number of frames
