Multistate, Multicomponent and Multicompartment Species

The libSBML “multi” extension implements support for the SBML Level 3 Multistate, Multicomponent and Multicompartment Species package.

Introduction

The SBML Level 3 Multistate, Multicomponent and Multicompartment Species (multi) package provides an extension of SBML Level 3 that supports encoding models with molecular complexes that have multiple components and can exist in multiple states and in multiple compartments. One of its goals also is to provide a platform for sharing models based on the specifications of bimolecular interactions and the rules governing such interactions. In addition, this specification includes features to support multicompartment species (species that are described as residing in more than one compartment).

Authors

The primary authors of the SBML Level 3 Multistate, Multicomponent and Multicompartment Species specification are Fenkgai Zhang and Martin Meier-Schellersheim.

The specification for this SBML package

This API documentation for libSBML does not provide a complete explanation of the SBML Level 3 Multistate, Multicomponent and Multicompartment Species package (whose nickname is “multi”). If you are developing software that uses “multi”, you are strongly urged to read the actual specification for the package. A link to the specification document current is provided below, along with a link to the page of known issues (if any). we apologise that our known issues pages are under reconstruction.

Specification for the SBML Level 3 Multistate, Multicomponent and Multicompartment Species package, current at the time of this libSBML release (5.20.5). Note: an Internet connection is required to access these documents.

Specification (in PDF format)	Known issues
Multistate, Multicomponent and Multicompartment Species package, Version 1 Release 1	Errata page

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Classes
class	BindingSiteSpeciesType
class	CompartmentReference
class	InSpeciesTypeBond
class	IntraSpeciesReaction
class	ListOfCompartmentReferences
class	ListOfInSpeciesTypeBonds
class	ListOfMultiSpeciesTypes
class	ListOfOutwardBindingSites
class	ListOfPossibleSpeciesFeatureValues
class	ListOfSpeciesFeatures
class	ListOfSpeciesFeatureTypes
class	ListOfSpeciesFeatureValues
class	ListOfSpeciesTypeComponentIndexes
class	ListOfSpeciesTypeComponentMapInProducts
class	ListOfSpeciesTypeInstances
class	MultiASTPlugin
class	MultiCompartmentPlugin
class	MultiExtension
class	MultiListOfReactionsPlugin
class	MultiModelPlugin
class	MultiPkgNamespaces
class	MultiSBMLDocumentPlugin
class	MultiSimpleSpeciesReferencePlugin
class	MultiSpeciesPlugin
class	MultiSpeciesReferencePlugin
class	MultiSpeciesType
class	MultiValidator
class	OutwardBindingSite
class	PossibleSpeciesFeatureValue
class	SpeciesFeature
class	SpeciesFeatureType
class	SpeciesFeatureValue
class	SpeciesTypeComponentIndex
class	SpeciesTypeComponentMapInProduct
class	SpeciesTypeInstance
class	SubListOfSpeciesFeatures

Detailed Description

The libSBML “multi” extension implements support for the SBML Level 3 Multistate, Multicomponent and Multicompartment Species package.

Introduction

The SBML Level 3 Multistate, Multicomponent and Multicompartment Species (multi) package provides an extension of SBML Level 3 that supports encoding models with molecular complexes that have multiple components and can exist in multiple states and in multiple compartments. One of its goals also is to provide a platform for sharing models based on the specifications of bimolecular interactions and the rules governing such interactions. In addition, this specification includes features to support multicompartment species (species that are described as residing in more than one compartment).

Authors

The primary authors of the SBML Level 3 Multistate, Multicomponent and Multicompartment Species specification are Fenkgai Zhang and Martin Meier-Schellersheim.

The specification for this SBML package

This API documentation for libSBML does not provide a complete explanation of the SBML Level 3 Multistate, Multicomponent and Multicompartment Species package (whose nickname is “multi”). If you are developing software that uses “multi”, you are strongly urged to read the actual specification for the package. A link to the specification document current is provided below, along with a link to the page of known issues (if any). we apologise that our known issues pages are under reconstruction.

Specification for the SBML Level 3 Multistate, Multicomponent and Multicompartment Species package, current at the time of this libSBML release (5.20.5). Note: an Internet connection is required to access these documents.

Specification (in PDF format)	Known issues
Multistate, Multicomponent and Multicompartment Species package, Version 1 Release 1	Errata page